sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
c39e32d8d4f23f126e85e04c73c4da8e2c296759195f77f183791e37d4d48954 | C | 41,396 | 1,112 | /**
******************************************************************************
* @file stm32f4xx_hal_adc_ex.c
* @author MCD Application Team
* @brief This file provides firmware functions to manage the following
* functionalities of the ADC extension peripheral:
* + Extended fea... |
d64507c93d130a66d679f14b8bb6486e8fdcf274f69dbe2ada621dc83b036da7 | C | 41,691 | 306 |
#include "fonts.h"
// Dit zijn de bitmaps voor de 3 verschillende fonts
static const uint16_t Font7x10 [] = {
0x0000, 0x0000, 0x0000, 0x0000, 0x0000, 0x0000, 0x0000, 0x0000, 0x0000, 0x0000, // sp
0x1000, 0x1000, 0x1000, 0x1000, 0x1000, 0x1000, 0x0000, 0x1000, 0x0000, 0x0000, // !
0x2800, 0x2800, 0x2800, 0x0000, 0x... |
a2ae45fc774f0b3263dd2b5c8a19ee0bae22bcdcc57c3cb4a3a49981669f509f | C | 42,339 | 1,122 | /**
******************************************************************************
* @file stm32f4xx_hal_rcc.c
* @author MCD Application Team
* @brief RCC HAL module driver.
* This file provides firmware functions to manage the following
* functionalities of the Reset and Clock Contr... |
cedf97267e39fb60d0a02950ceb32ec33a7c9f753b5b3026c280883e7a5afe79 | C | 42,923 | 922 | /**
******************************************************************************
* @file stm32f4xx_ll_adc.c
* @author MCD Application Team
* @brief ADC LL module driver
******************************************************************************
* @attention
*
* Copyright (c) 2017 STMicroelect... |
0f5844278dab445619b6bca968f4b5900169ac2b3144c8741160979d0643a0ba | C | 43,077 | 1,393 | /* hfile_libcurl.c -- libcurl backend for low-level file streams.
Copyright (C) 2015-2017 Genome Research Ltd.
Author: John Marshall <jm18@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
... |
64f29e2396b1835b74570ecd86143bf4a00355939127294a26a415b59931ac07 | C | 43,110 | 1,641 | /*
* Copyright (c) 2017-2020 Genome Research Ltd.
* Author(s): James Bonfield
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* ... |
21b988b5efff7f437a1605a906784a8b3f845574587f2cd8e31afaf9b84d0e75 | C | 45,290 | 1,186 | #include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "lif.h"
#include "poisson.h"
/* Create the synaptic connections from Pyr neurons*/
void make_connection_pyr(struct LIF *post_neuron,
struct LIF *pre_neuron,
double w_pyr, double g_pyr, double t_pyr, double d_pyr){
int pre_neuron_id = pre_neuro... |
8a6b4f11cf40509a2953eb33d8548cb1cb2aa238d59b0c7b933ed7feddcf7fd5 | C | 45,729 | 1,196 | /* sam_view.c -- SAM<->BAM<->CRAM conversion.
Copyright (C) 2009-2021 Genome Research Ltd.
Portions copyright (C) 2009, 2011, 2012 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentatio... |
0e047e2d4918a6bafacae6cf3c4d4d0228fca01f76bbdfb5427ac222fd4b0e49 | C | 45,743 | 1,535 | /* thread_pool.c -- A pool of generic worker threads
Copyright (c) 2013-2020 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Softwa... |
a5ef1155a054d255afb0e479694878dae4810bf07dc6a2d19e0c8b789589e0cc | C | 46,368 | 1,442 | /* synced_bcf_reader.c -- stream through multiple VCF files.
Copyright (C) 2012-2021 Genome Research Ltd.
Author: Petr Danecek <pd3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the ... |
c5e5f450317388536aa67dbbcf255bb9eb14b470e4969d69f583a38fa373bf12 | C | 48,933 | 1,556 | /* hfile_libcurl.c -- libcurl backend for low-level file streams.
Copyright (C) 2015-2017, 2019-2020 Genome Research Ltd.
Author: John Marshall <jm18@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"... |
dd5024fea7fdd5855731bc50f4202cdd0555cb6b8722a5e8dca2091449082518 | C | 49,904 | 1,347 | /**
******************************************************************************
* @file stm32f4xx_hal_flash_ex.c
* @author MCD Application Team
* @brief Extended FLASH HAL module driver.
* This file provides firmware functions to manage the following
* functionalities of the FLASH... |
0afed3e0977427923ab68cf8a0432928d607969782b9b789cea0b02262c04e62 | C | 51,170 | 1,694 | /*
* Copyright (c) 2016-2020 Genome Research Ltd.
* Author(s): James Bonfield
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
*... |
562e92b7192e3fb79611013e492beff6492ec1f5f58c2ec888e9925d2762066d | C | 56,940 | 2,012 | /*
Copyright (c) 2012-2013 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
0a7b67fba44aaa9d04ffefc8583eb297f8d1860d2373a03d1f448eb3c718527a | C | 58,247 | 1,478 | /*
LZ4 - Fast LZ compression algorithm
Copyright (C) 2011-2017, Yann Collet.
BSD 2-Clause License (http://www.opensource.org/licenses/bsd-license.php)
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
... |
d8900897357a8b249ed370438c32223ea8c6b92879be54db73f0f876abbfa00c | C | 63,776 | 1,498 | /* bam_plcmd.c -- mpileup subcommand.
Copyright (C) 2008-2015, 2019-2021 Genome Research Ltd.
Portions copyright (C) 2009-2012 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation fi... |
a4ec79a08ca277df93bde7035ca045695ddb430069f87654e38861eaa7755023 | C | 63,908 | 2,083 | /* The MIT License
Copyright (c) 2008 Broad Institute / Massachusetts Institute of Technology
2011, 2012 Attractive Chaos <attractor@live.co.uk>
Copyright (C) 2009, 2013-2017 Genome Research Ltd
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software ... |
3d4a018f69f0f493151993944efd3c8622d0c41dd9eac3a850a8d2259b093194 | C | 64,000 | 1,754 | /* stats.c -- This is the former bamcheck integrated into samtools/htslib.
Copyright (C) 2020-2021 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"),... |
a9188f270e82fe4e9211209f9dd1fb0f299ec0e8e452c7f50cdf58b11cc38ed6 | C | 69,136 | 2,191 | /* bam_markdup.c -- Mark duplicates from a coord sorted file that has gone
through fixmates with the mate scoring option on.
Copyright (C) 2017-2021 Genome Research Ltd.
Author: Andrew Whitwham <aw7@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a co... |
af050dc5f3f50dfc5d4caff3b52348e70578b007e181b580108b19fb18347b26 | C | 77,769 | 2,110 | /**
******************************************************************************
* @file stm32f4xx_hal_adc.c
* @author MCD Application Team
* @brief This file provides firmware functions to manage the following
* functionalities of the Analog to Digital Converter (ADC) peripheral:
* ... |
bf97adf235e3b1eb7dc337a92903f9a0b3ff9657345845efc52dd6089c2bf4b7 | C | 78,940 | 2,214 | /* test/sam.c -- SAM/BAM/CRAM API test cases.
Copyright (C) 2014-2020 Genome Research Ltd.
Author: John Marshall <jm18@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software with... |
3ea2c1e1c635287501242d196d5e1c133b755fe4e7dacf85bcaa312c9ca94914 | C | 80,191 | 2,740 | /*
Copyright (c) 2018-2020 Genome Research Ltd.
Authors: James Bonfield <jkb@sanger.ac.uk>, Valeriu Ohan <vo2@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain th... |
b5c91ae92027d44cc2195960a588e78c4c9228df8c125072fd6256b88638f105 | C | 81,602 | 2,568 | /* The MIT License
Copyright (c) 2008 Broad Institute / Massachusetts Institute of Technology
2011, 2012 Attractive Chaos <attractor@live.co.uk>
Copyright (C) 2009, 2013-2021 Genome Research Ltd
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software ... |
3fa2e09c5f459dde07689e2ebffd20487572b05b09f2601b04185238f0896330 | C | 82,358 | 2,428 | /**
******************************************************************************
* @file stm32f4xx_hal_tim_ex.c
* @author MCD Application Team
* @brief TIM HAL module driver.
* This file provides firmware functions to manage the following
* functionalities of the Timer Extended per... |
a0735426572b998d0eb9b46946af618df4a9ba31478c2aa1e1b6017a6aa486c2 | C | 83,418 | 1,793 | #include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include "lif.h"
#include "my_lif.h"
void init_pyr(sfmt_t *rng, struct LIF *lif){
strcpy(lif->type,"pyr");
lif->population_id = 0;
lif->tau_m = 20.0;
lif->Cm = 500.0; //300.0;
lif->tau_ref = 2.0;
// nalg: lif->V[0] = lif->V_thresh... |
60e51269ec7a5c5c2aad11a9f93f0a7469355ab050b36c396bc8eb3f2a6d65aa | C | 92,877 | 2,990 | /* hts.c -- format-neutral I/O, indexing, and iterator API functions.
Copyright (C) 2008, 2009, 2012-2017 Genome Research Ltd.
Copyright (C) 2012, 2013 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and as... |
d1245be349dc3c4bbafb298155574bf7f0589ae7526c36a23cc8a729fb38da6d | C | 94,513 | 2,862 | /* sam.c -- SAM and BAM file I/O and manipulation.
Copyright (C) 2008-2010, 2012-2018 Genome Research Ltd.
Copyright (C) 2010, 2012, 2013 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated docum... |
d53c89756c4cc5ec2d455833eec7aaf5054de626f87c2062682c7e171fa198ec | C | 97,055 | 2,817 | /* bam_sort.c -- sorting and merging.
Copyright (C) 2008-2021 Genome Research Ltd.
Portions copyright (C) 2009-2012 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Author: Martin Pollard <mp15@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this soft... |
9d03aa75493f24adc46ae92d8215c89f4d91e6096b2d4ceefb598a698e553451 | C | 107,337 | 2,577 | /* stats.c -- This is the former bamcheck integrated into samtools/htslib.
Copyright (C) 2012-2021 Genome Research Ltd.
Author: Petr Danecek <pd3@sanger.ac.uk>
Author: Sam Nicholls <sam@samnicholls.net>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and ass... |
50cfda358f5d2897e12ea32207bd699e81393348d011a551df0e5a82c8d8b52d | C | 111,424 | 3,184 | /*
Copyright (c) 2012-2013 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
280f16ed4fdc03f8888e33c1feb1723049ec7b0d32e7890daf53ba7506bf3f08 | C | 120,328 | 3,405 | /*
Copyright (c) 2012-2014 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
c4417ca8255c5a6954f091e3b007fd2ade453b3ce40c97b32779c4accadae634 | C | 121,656 | 4,034 | /*
Copyright (c) 2012-2021 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
c0b6b92e1836f0e2dc9341308b3aa1d7d1ad64f4a12aecd50cf00db0323d9572 | C | 124,272 | 3,476 | /*
Copyright (c) 2012-2020 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
906e5a1bebb0ef7a448512dfeaa46b9bba81c522ca57d4bc0f4a5397921a73f0 | C | 124,850 | 3,553 | /*
Copyright (c) 2012-2020 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
98989d92f06ef184e155d591386d666ae089eba9c7039719b68f40af187ff11f | C | 132,236 | 4,639 | /*
Copyright (c) 2012-2016 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
97ae7de391d5eb96863d3627f682af61f6e4bcf9ceaaad4b6516552628e6a115 | C | 132,516 | 3,751 | /**
******************************************************************************
* @file stm32f4xx_hal_uart.c
* @author MCD Application Team
* @brief UART HAL module driver.
* This file provides firmware functions to manage the following
* functionalities of the Universal Asynchron... |
24fbfb38d146b9e85377d0076a8ea2e1397b015e0e63e30f56bb2fbd481d3a79 | C | 132,665 | 3,878 | /* vcf.c -- VCF/BCF API functions.
Copyright (C) 2012, 2013 Broad Institute.
Copyright (C) 2012-2017 Genome Research Ltd.
Portions copyright (C) 2014 Intel Corporation.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software an... |
e15174e12baee3daa62c7f52b5a5278a15043b8bff7aa779b04ea645abc53c08 | C | 153,739 | 4,745 | /* hts.c -- format-neutral I/O, indexing, and iterator API functions.
Copyright (C) 2008, 2009, 2012-2021 Genome Research Ltd.
Copyright (C) 2012, 2013 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and as... |
16e55130d60edca2b5fa1b709acc76bcd36ae46d3621cc34da27365c389e65eb | C | 154,632 | 4,149 | /******************************************************************************
This file is part of the FAST protein structure alignment package,
developed by Jianhua Zhu at the Bioinformatics Program of Boston University.
******************************************************************************/
/*=============... |
52cea3b09a6f19497d10bd6b6f13538e611cdbe6b32e26f41c8c28e2af364e85 | C | 155,436 | 3,784 | /**
******************************************************************************
* @file stm32f4xx_hal_rcc_ex.c
* @author MCD Application Team
* @brief Extension RCC HAL module driver.
* This file provides firmware functions to manage the following
* functionalities RCC extension p... |
d9041fc08868af55cee5765b4188544b6c5855214ddfcbbd81998e1baad021bb | C | 164,574 | 4,832 | /* vcf.c -- VCF/BCF API functions.
Copyright (C) 2012, 2013 Broad Institute.
Copyright (C) 2012-2021 Genome Research Ltd.
Portions copyright (C) 2014 Intel Corporation.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software an... |
59e95bd1f094ffbab91df439fef902bc05b23bbb246a82b951b425b15e960c40 | C | 171,897 | 5,894 | /*
Copyright (c) 2012-2021 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this lis... |
1ed8549e8990486989c07a394ae3608baec4079ead827e87ccc0289d62fce937 | C | 200,000 | 6,177 | /**
******************************************************************************
* @file stm32f4xx_hal_tim.c
* @author MCD Application Team
* @brief TIM HAL module driver.
* This file provides firmware functions to manage the following
* functionalities of the Timer (TIM) periphera... |
241156ed095c6ec4e78aad8ca9310027e61dcb162a00b525ae7a59ced9a8d59a | C | 200,000 | 4,679 | /* Generated by Cython 0.29.21 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
#error Cython... |
254390b7427ff82abf5656678c385875f38b3c10f0dba05150e7947166a01cbe | C | 200,000 | 4,720 | /* Generated by Cython 0.29.20 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
#error Cython... |
a139f275ebbebd74af642daea14a62951d8c5c8200f7e4c53274b931b4bb6384 | C | 200,000 | 6,188 | /**
******************************************************************************
* @file stm32f4xx_hal_i2c.c
* @author MCD Application Team
* @brief I2C HAL module driver.
* This file provides firmware functions to manage the following
* functionalities of the Inter Integrated Circ... |
f5dc86541f7ebe162190170db9ee31ca0d05136251ea130b493baac7c48058ed | C | 200,000 | 6,282 | /* sam.c -- SAM and BAM file I/O and manipulation.
Copyright (C) 2008-2010, 2012-2021 Genome Research Ltd.
Copyright (C) 2010, 2012, 2013 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated docum... |
fe4b8779891809b28c7cc3da219bae3551776219a34ab92b2be9430a635ea7ce | C | 200,000 | 7,834 | /************************************************************************/
/** Functions to compute cumulative distributions and their inverses **/
/** for the NIfTI-1 statistical types. Much of this code is taken **/
/** from other sources. In particular, the cdflib functions by **/
/** Brown and ... |
70aa246aa91ec20fc47c8445d9714f9d90cdfd0033a501a4b79ee1aaf29bcd45 | C | 200,001 | 5,557 | #define _NIFTI1_IO_C_
#include <nifti/nifti1_io.h> /* typedefs, prototypes, macros, etc. */
/*****===================================================================*****/
/***** Sample functions to deal with NIFTI-1 and ANALYZE files *****/
/*****............................................................. |
76d832a6ece4ff2056d0bf703dc294d17e87d6e363ed3396e5c6eeabd27fb40e | C++ | 42 | 2 | #include "pch.h"
#include "UTconstants.h"
|
56440d1a8617f210386cf12e3e243c95d2641ffe4294e786312900f29e15280a | C++ | 45 | 2 | #include "pch.h"
#include "KinarmDynamics.h"
|
28bbfc0f6ac29210d9d97af332d2bc4aa6d2073cad90df488dcf42509885e891 | C++ | 46 | 3 | #include "pch.h"
#include "UTchannel_data.h"
|
27316e1ec517bc315157484dfbdcdef1b9bd4a6867246706b6323736b47432f5 | C++ | 48 | 2 | #include "pch.h"
#include "UTproduct_strings.h"
|
6ed22b01b3699b87622665d58039acebb2044951bd37f9fc02184cff7b460637 | C++ | 133 | 8 | #include "pch.h"
#include "UTtelemetry.h"
const UTTelemetry& UTTelemetry::Current()
{
static const UTTelemetry tlm;
return tlm;
}
|
ff014438fd4aaeb45e423eda61329e2a969f9e7ab0ff47586ae32b5b91ecb5ab | C++ | 177 | 8 | /*
* SPDX-FileCopyrightText: Copyright (c) 2019, NVIDIA CORPORATION.
* SPDX-License-Identifier: Apache-2.0
*/
#include <benchmark/benchmark.h> // NOLINT
BENCHMARK_MAIN();
|
b20ad711fa06e3ef62f8e3c626e13b3bdc69cff08c60c8b358f38b09e16c99ef | C++ | 186 | 5 | // pch.cpp: source file corresponding to the pre-compiled header
#include "pch.h"
// When you are using pre-compiled headers, this source file is necessary for compilation to succeed.
|
55cd07cdb4248ab0af5f6e8683d5cb4e9d05c53977fdf475e16721e74e3b7d87 | C++ | 248 | 10 | #include "pch.h"
#include "RippleInConfig.h"
void RippleInConfig::GenerateReport(std::wostream& oss) const
{
oss << L" " << m_name.c_str() << (m_enabled ? L":\n" : L" disabled\n");
if (m_enabled) {
SpikesInConfig::GenerateReport(oss);
}
}
|
77df402e85b5f1286403827fb6695e640a2bfbaa0d13de782899b5b0f4d5d5b7 | C++ | 248 | 10 | #include "pch.h"
#include "PlexonInConfig.h"
void PlexonInConfig::GenerateReport(std::wostream& oss) const
{
oss << L" " << m_name.c_str() << (m_enabled ? L":\n" : L" disabled\n");
if (m_enabled) {
SpikesInConfig::GenerateReport(oss);
}
}
|
f92bb2b6a27807db38d91dc2925391cc9dd077507804bfa0b8b79750b0fa7fd4 | C++ | 651 | 39 | /*
* ContextSummary.cpp
*
* Created on: Jan 15, 2018
* Author: Aaron Quinlan
*/
#include "ContextSummary.h"
ContextSummary::ContextSummary()
{
}
ContextSummary::~ContextSummary()
{
}
bool ContextSummary::parseCmdArgs(int argc, char **argv, int skipFirstArgs) {
for (_i=_skipFirstArgs; _i < argc; _i++) {... |
7195ece1fe6d3d96c90a51538b78b43c2634357d7fa58d07d3654d9156021113 | C++ | 653 | 30 | #include "pch.h"
#include "RangeParser.h"
#include "RangeParserImpl.h"
#include "MLRangeImpl.h"
std::optional<ParseRangeResult> ParseRange(const wchar_t* txt)
{
bool bRet = false;
RangeParser_pcb_struct pcb;
pcb.pointer = txt;
init_RangeParser(&pcb);
RangeParser(&pcb);
if (pcb.exit_flag == AG_SUCCESS_CODE) {
r... |
d49cd17c74a763c966fc0d2422d58e1884993ddc7c0918ef8d5f524b4fd3074a | C++ | 722 | 35 | #include "pch.h"
#include "DurationParser.h"
#include "DurationParserImpl.h"
std::optional<interval_t<double>> ParseDuration(const wchar_t* s)
{
_ASSERTE(s != nullptr);
bool bRet = false;
DurationParser_pcb_type pcb;
pcb.pointer = s;
init_DurationParser(&pcb);
DurationParser(&pcb);
if (pcb.exit_flag == AG_SUCC... |
9765e5f0cbf41c84294afac2374db97f2ea7b062a3b2dc4ad5fc9d501a642a3f | C++ | 797 | 18 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
b5de9100d775d26303c853b64d79cf7569b19ce4e197716e551b692250ab8911 | C++ | 797 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
abbde748d4f5e9cd97b257d45cc190a3d2897fc86b93ecc0b2939afa17cb2d96 | C++ | 800 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
ae4ab8bf19831892c78167bd34ca91dd794fb96fa479855e7eb9c92a8afbce76 | C++ | 801 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
b8d9a1b200303e3295caca81b245b859bc71dcc81a075c492776cd8ea7fbe960 | C++ | 801 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
887bda14a4f6d7a2e5ef3882262ffbf903bad4e3dbaa9dd29f3dc9aea25d7b87 | C++ | 802 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
b2b014d34312f2eae19c904bfc03dbeb13727e152f6fa386c7ccc6c995f98588 | C++ | 802 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
2758afb0babb7356ff447c8250a1a9327101eb3b0744e3ecfa6bb957f6302712 | C++ | 803 | 36 | #include "pch.h"
#include "CSVParser.h"
#include "CSIParserImpl.h"
#include "CSVParserImpl.h"
template <> std::optional<std::vector<int64_t>> ParseCSV(const wchar_t* txt)
{
CSIParser_pcb_type pcb;
pcb.pointer = txt;
init_CSIParser(&pcb);
CSIParser(&pcb);
if (pcb.exit_flag == AG_SUCCESS_CODE) {
return std::move(... |
d8379e1fe0426acea8c74905ff16b70955698740e4526ea9d27e488b8044a5e1 | C++ | 804 | 18 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
bf4585bfa8a389809d0ca44f07f8b9d91f872a447d01598c059a1cf17560f5f4 | C++ | 805 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
272f4679930c2c8b0723e937e1be70c4e27c5f37d8e7a9614079ab409b3bf8ff | C++ | 806 | 20 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
dfcb65dccc1b6181733ba77b1c310868aece9a4161013ec8188c5f9af6327098 | C++ | 808 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
d054b1036dc83b0949c0dbf249500d9c48a16da2e021bb8847acc6bb63fe4d74 | C++ | 809 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
468e10769e5537c52cb7e46f0619473631945d2e0031130c9dd81a488e7acab9 | C++ | 811 | 18 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
1e4424bf25055c0679a81fecbda5fb8a73b683f02b44449989d6a23836783806 | C++ | 813 | 19 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
5d54d5517d0c18cd255ad81d9e1be1e9e17ba553ef417b92eed792234cf9e681 | C++ | 821 | 24 | #include "mex.h"
// MX_API_VER has unfortunately not changed between R2013b and R2014a,
// so we use the new MATRIX_DLL_EXPORT_SYM as an ugly hack instead
#if defined(__cplusplus) && defined(MATRIX_DLL_EXPORT_SYM)
#define EXTERN_C extern
namespace matrix{ namespace detail{ namespace noninlined{ namespace mx_a... |
c8483c32260e328f4a989c5038b94ade1a4cefa491bf93b14c96637a14aad38a | C++ | 821 | 24 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
a4b7d770e19e18dcc33343ef10a8705c5b86e1a2f00b5c56852bd03ad3807587 | C++ | 860 | 26 | /*
* summaryHelp.cpp
*
* Created on: Jan 2, 2019
* Author: Aaron Quinlan
*/
#include "CommonHelp.h"
void summary_help(void) {
cerr << "\nTool: bedtools sammary" << endl;
cerr << "Version: " << VERSION << "\n";
cerr << "Summary: Report summary statistics of the intervals in a file " << endl ... |
07cb6980e6a70535b918a7224b9404891c2b5e56398ad5c9b29eecd9a0fb386c | C++ | 866 | 24 | #include "mex.h"
// MX_API_VER has unfortunately not changed between R2013b and R2014a,
// so we use the new MATRIX_DLL_EXPORT_SYM as an ugly hack instead
#if defined(__cplusplus) && defined(MATRIX_DLL_EXPORT_SYM)
#define EXTERN_C extern
namespace matrix{ namespace detail{ namespace noninlined{ namespace mx_a... |
c02a92fb6bd5cd30511c42e4b82e8d27842b0254f60e4df6fe937e726a3bc630 | C++ | 881 | 39 | #include "PlusFields.h"
#include "SingleLineDelimTextFileReader.h"
PlusFields::PlusFields()
{
}
bool PlusFields::initFromFile(SingleLineDelimTextFileReader *fileReader)
{
size_t numFields = fileReader->getNumFields() - _numOffsetFields;
if (size() != numFields) {
_fields.resize(numFields);
}
for (size_t i=0; ... |
03aeba840d4194ccaae1e91ef643aeaf3e3265f493740ece0cab4087ced12ad4 | C++ | 920 | 30 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
d66be9f54dae931038f8ec121733af555b7719e1397d05e42b35f4b34aeb2ade | C++ | 939 | 31 | #include <RcppArmadillo.h>
// [[Rcpp::depends(RcppArmadillo)]]
// [[Rcpp::plugins(cpp11)]]
using namespace Rcpp;
using namespace arma;
// H - matrix of size k x n
// W - matrix of size m x k
// V - matrix of size m x k
// E - sparse matrix of size m x n
// [[Rcpp::export]]
double objErr_i(
const arma::mat& H,... |
c21b7d807985a4f83ef3dcf1b8320a199852794a63d74eeee6145153af72593c | C++ | 945 | 21 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
dba2dfc7da6a2e2bad022d59d789d8ed962fb190241ae8c38f8eec7b5a8a878d | C++ | 949 | 22 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
86ad0f0d7ceeff2d0bfd72512647609b7e3b00114b1167eae3460a32b82e9d60 | C++ | 959 | 21 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
1d7496717b5065606c7c2ea586a5cddedb4ea1208266122ef1eddcbae3623ea1 | C++ | 960 | 22 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
78dd9eeb6c981676de923bb85490f4af6ece295c4e7102cdd3ea8dccc5043cb4 | C++ | 960 | 30 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
64d08ba789681d5d351fc51291050ec01cc2e4e3b7de9e096f16d71c962b4825 | C++ | 967 | 22 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
6c8be4fd75e835f55be201a61cb41a00b8aa857281904f9e3de1fd3462ca289f | C++ | 971 | 29 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
2cb0450471ab146decc5237484987739269364d857977d04a338fe1adde7a9a8 | C++ | 980 | 50 | /*
* ContextComplement.cpp
*
* Created on: Feb 19, 2015
* Author: nek3d
*/
#include "ContextComplement.h"
ContextComplement::ContextComplement()
{
setSortedInput(true);
setUseMergedIntervals(true);
setExplicitBedOutput(true);
}
ContextComplement::~ContextComplement()
{
}
bool ContextComplement::isVa... |
1b4864cf6eb8aec5450ceab82684ddf16e225c0cb99a5ec59b551af6cf048d66 | C++ | 984 | 29 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
3d3924ffca00d1ee6b5932727003c8ef6b932c40c23011656b67bfebd68e92de | C++ | 996 | 32 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
46ee813f74fd225731e41bf773db5816472b1fc666ce268bd8ac4c3d39f655fd | C++ | 1,016 | 34 | #include "rtmpose_tracker_onnxruntime.h"
RTMPoseTrackerOnnxruntime::RTMPoseTrackerOnnxruntime(const std::string& det_model_path, const std::string& pose_model_path, int dectect_interval)
:m_rtm_det_ptr(nullptr),
m_rtm_pose_ptr(nullptr),
m_frame_num(0),
m_dectect_interval(dectect_interval)
{
m_rtm_det_ptr = std::m... |
4f864f8abe71b479169e3b423cf12bb4673dcff01c0ff2dee84091e6f6e9efdb | C++ | 1,042 | 32 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
dbfb4439ffe3f604b1bb0fb33935fe3a5612071c43b6ba7e175195e8bc9dbb51 | C++ | 1,066 | 38 | #include "inference.h"
/**
* @brief Inference network
* @param image Input image
* @param detect_model RTMDet model
* @param pose_model RTMPose model
* @return Inference result
*/
std::vector<std::vector<PosePoint>> inference(cv::Mat& image, RTMDet& detect_model, RTMPose& pose_model)
{
cv::Mat im0;
image.copyT... |
d80f9bccf9c843725facb26530b5af569410ffa1be16c3aeb51e1f6ba8853022 | C++ | 1,128 | 34 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
23b5ac02d5c45a723d65b04a57d56b40e1e788497e2a02f88ca34b69d1ffad8c | C++ | 1,134 | 54 | /**
* @file Pump.cpp
* @brief Pump implementation — relay-driven syringe pump control.
*/
#include "Pump.h"
Pump::Pump(int8_t pin, uint32_t duration)
: Device(pin, OUTPUT, "PUMP") {
this->duration = duration;
startTimestamp = 0;
endTimestamp = 0;
isTesting = false;
}
void Pump::Activate(uint32_t startTs... |
1bdce47d0ac88c93df91ae3d07041b93ed736ccf32191b06b222983b973ad633 | C++ | 1,251 | 37 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
959de7c5bb1b8145b9fd231840a55b0219892ccbc987704d7f4619fb36167d7f | C++ | 1,257 | 45 | //This file is part of the UTCS/RGM Reach-Grasp-Manipulate experiments
//
// Copyright(C) 2002-2025 Gil Rivlis
//
// This program is free software : you can redistribute it and /or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Lic... |
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